Article
Noise-robust assessment of SNP array based CNV calls through local noise estimation of log R ratios.
Statistical applications in genetics and molecular biology - 28 Apr 2018
Cosemans Nele, Claes Peter, Brison Nathalie, Vermeesch Joris Robert, Peeters Hilde
Abstract excerpt
Arrays based on single nucleotide polymorphisms (SNPs) have been successful for the large scale discovery of copy number variants (CNVs). However, current CNV calling algorithms still have limitations in detecting CNVs with high specificity and sensitivity, especially in case of small (<100 kb) CNVs. Therefore, this study presents a simple statistical analysis to evaluate CNV calls from SNP arrays in order to...
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