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Article

MAGNAMWAR: an R package for genome-wide association studies of bacterial orthologs.

Bioinformatics (Oxford, England) - 1 Jun 2018

Sexton Corinne E, Smith Hayden Z, Newell Peter D, Douglas Angela E, Chaston John M

Abstract excerpt

Summary: Here we report on an R package for genome-wide association studies of orthologous genes in bacteria. Before using the software, orthologs from bacterial genomes or metagenomes are defined using local or online implementations of OrthoMCL. These presence-absence patterns are statistically associated with variation in user-collected phenotypes using the Mono-Associated GNotobiotic Animals Metagenome-Wide...

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Identifiers

PMID: 29342236
DOI: 10.1093/bioinformatics/bty001
PMCID: PMC5972563

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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