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Evaluation of Bovine High-Density SNP Genotyping Array in Indigenous Dairy Cattle Breeds.

Animal biotechnology - 3 Apr 2018

Dash S, Singh A, Bhatia A K, Jayakumar S, Sharma A, Singh S, Ganguly I, Dixit S P

Abstract excerpt

In total 52 samples of Sahiwal ( 19 ), Tharparkar ( 17 ), and Gir ( 16 ) were genotyped by using BovineHD SNP chip to analyze minor allele frequency (MAF), genetic diversity, and linkage disequilibrium among these cattle. The common SNPs of BovineHD and 54K SNP Chips were also extracted and evaluated for their performance. Only 40%-50% SNPs of these arrays was found informative for genetic analysis in these...

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PMID: 28636460
DOI: 10.1080/10495398.2017.1329150

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MAF

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