High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development.

doi:10.1038/ng.3886

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Article

High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development.

Nature genetics - 1 Jul 2017

Daccord Nicolas, Celton Jean-Marc, Linsmith Gareth, Becker Claude, Choisne Nathalie, Schijlen Elio, van de Geest Henri, Bianco Luca, Micheletti Diego, Velasco Riccardo, Di Pierro Erica Adele, Gouzy Jérôme, Rees D Jasper G, Guérif Philippe, Muranty Hélène, Durel Charles-Eric, Laurens François, Lespinasse Yves, Gaillard Sylvain, Aubourg Sébastien, Quesneville Hadi, Weigel Detlef, van de Weg Eric, Troggio Michela, Bucher Etienne

Abstract excerpt

Using the latest sequencing and optical mapping technologies, we have produced a high-quality de novo assembly of the apple (Malus domestica Borkh.) genome. Repeat sequences, which represented over half of the assembly, provided an unprecedented opportunity to investigate the uncharacterized regions of a tree genome; we identified a new hyper-repetitive retrotransposon sequence that was over-represented in...

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PMID: 28581499
DOI: 10.1038/ng.3886

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