Article
Rice SNP-seek database update: new SNPs, indels, and queries.
Nucleic acids research - 4 Jan 2017
Mansueto Locedie, Fuentes Roven Rommel, Borja Frances Nikki, Detras Jeffery, Abriol-Santos Juan Miguel, Chebotarov Dmytro, Sanciangco Millicent, Palis Kevin, Copetti Dario, Poliakov Alexandre, Dubchak Inna, Solovyev Victor, Wing Rod A, Hamilton Ruaraidh Sackville, Mauleon Ramil, McNally Kenneth L, Alexandrov Nickolai
Abstract excerpt
We describe updates to the Rice SNP-Seek Database since its first release. We ran a new SNP-calling pipeline followed by filtering that resulted in complete, base, filtered and core SNP datasets. Besides the Nipponbare reference genome, the pipeline was run on genome assemblies of IR 64, 93-11, DJ 123 and Kasalath. New genotype query and display features are added for reference assemblies, SNP datasets and...
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