Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Targeted virus detection in next-generation sequencing data using an automated e-probe based approach.

Virology - 1 Aug 2016

Visser Marike, Burger Johan T, Maree Hans J

Abstract excerpt

The use of next-generation sequencing for plant virus detection is rapidly expanding, necessitating the development of bioinformatic pipelines to support analysis of these large datasets. Pipelines need to be easy implementable to mitigate potential insufficient computational infrastructure and/or skills. In this study user-friendly software was developed for the targeted detection of plant viruses based on...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Computational Biology
Share to Datasets as Topic
Share to DNA Probes

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Genome, Viral

Share to Plant Diseases

Share to Plant Viruses

Share to Software

Share to Viruses

Source

Identifiers

PMID: 27209446
DOI: 10.1016/j.virol.2016.05.008

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Targeted virus detection in next-generation sequencing data using an automated e-probe based approach.PMID 27209446Read ↗

Grapevine Virology in the Third-Generation Sequencing Era: From Virus Detection to Viral EpitranscriptomicsSemantic proximity Read ↗

Viroscope: plant viral diagnosis from NGS data using biologically-informed genome assembly coverageSemantic proximity Read ↗

A method for in-depth analysis of circular DNA virus populations by unambiguously profiling the low abundant virus variants and partial genomic componentsSemantic proximity Read ↗

PVDP: A portable open source pipeline for detection of plant viruses in RNAseq data. A case study on potato viruses in Antioquia (Colombia)Semantic proximity Read ↗

Validation of High-Throughput Sequencing (HTS) for Routine Detection of Citrus Viruses and Viroids.Semantic proximity Read ↗

High Throughput Sequencing for Detection of Viruses in Grapevine: Performance Analysis and Best PracticesSemantic proximity Read ↗

Deep sequencing for discovery and evolutionary analysis of plant viruses.Semantic proximity Read ↗

Probe-Based RT-qPCR Workflow for Dual Interrogation of Virus/Viroid Genotype in Molecular Diagnostics Multiplex.Semantic proximity Read ↗

In silico approach to reveal viral populations in grapevine cultivar Tannat using transcriptome data.Semantic proximity Read ↗

High-Throughput Sequencing of Small RNAs for Diagnostics of Grapevine Viruses and Viroids in Russia.Semantic proximity Read ↗

Characterization of Potato Virus Y Isolates and Assessment of Nanopore Sequencing to Detect and Genotype Potato Viruses.Semantic proximity Read ↗

Next generation RNA sequencing analysis of nuclear grapevines to identify viruses and viroidsSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.