Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

MSRE-HTPrimer: a high-throughput and genome-wide primer design pipeline optimized for epigenetic research.

Clinical epigenetics - 1 Jan 2016

Pandey Ram Vinay, Pulverer Walter, Walter Pulverer, Kallmeyer Rainer, Beikircher Gabriel, Pabinger Stephan, Kriegner Albert, Weinhäusel Andreas

Abstract excerpt

BACKGROUND: Methylation-sensitive restriction enzymes-polymerase chain reaction (MSRE-PCR) has been used in epigenetic research to identify genome-wide and gene-specific DNA methylation. Currently, epigenome-wide discovery studies provide many candidate regions for which the MSREqPCR approach can be very effective to confirm the findings. MSREqPCR provides high multiplexing capabilities also when starting with...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to CpG Islands
Share to DNA Methylation

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to DNA Primers

Share to Epigenomics

Share to High-Throughput Nucleotide Sequencing

Share to Multiplex Polymerase Chain Reaction

Share to Polymorphism, Single Nucleotide

Source

Open in PubMed Open full text

Identifiers

PMID: 26949424
DOI: 10.1186/s13148-016-0190-9
PMCID: PMC4779238

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

MSRE-HTPrimer: a high-throughput and genome-wide primer design pipeline optimized for epigenetic research.PMID 26949424Read ↗

RExPrimer: an integrated primer designing tool increases PCR effectiveness by avoiding 3' SNP-in-primer and mis-priming from structural variation.Semantic proximity Read ↗

Systematic design of multiplex methylation-specific qPCR for cancer related biomarkersSemantic proximity Read ↗

MPD: multiplex primer design for next-generation targeted sequencing.Semantic proximity Read ↗

EasyExonPrimer: automated primer design for exon sequences.Semantic proximity Read ↗

BatchPrimer3: a high throughput web application for PCR and sequencing primer design.Semantic proximity Read ↗

diffONT: predicting methylation-specific PCR biomarkers based on nanopore sequencing data for clinical applicationSemantic proximity Read ↗

PrimerMapper: high throughput primer design and graphical assembly for PCR and SNP detection.Semantic proximity Read ↗

CalcDalton: a tool for multiplex genotyping primer design for single-base extension reactions using cleavable primers.Semantic proximity Read ↗

MultiPrime: A Reliable and Efficient Tool for Targeted Next-Generation SequencingSemantic proximity Read ↗

VizPrimer: a web server for visualized PCR primer design based on known gene structure.Semantic proximity Read ↗

Primer design for PCR and sequencing in high-throughput analysis of SNPs.Semantic proximity Read ↗

SNPbox: web-based high-throughput primer design with an eye for repetitive sequences.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.