Article
M(3)-S: a genotype calling method incorporating information from samples with known genotypes.
BMC bioinformatics - 3 Dec 2015
Li Gengxin, Zhao Hongyu
Abstract excerpt
BACKGROUND: A key challenge in analyzing high throughput Single Nucleotide Polymorphism (SNP) arrays is the accurate inference of genotypes for SNPs with low minor allele frequencies. A number of calling algorithms have been developed to infer genotypes for common SNPs, but they are limited in their performance in calling rare SNPs. The existing algorithms can be broadly classified into three categories,...
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