Complete chloroplast and ribosomal sequences for 30 accessions elucidate evolution of Oryza AA genome species.

doi:10.1038/srep15655

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Article

Complete chloroplast and ribosomal sequences for 30 accessions elucidate evolution of Oryza AA genome species.

Scientific reports - 28 Oct 2015

Kim Kyunghee, Lee Sang-Choon, Lee Junki, Yu Yeisoo, Yang Kiwoung, Choi Beom-Soon, Koh Hee-Jong, Waminal Nomar Espinosa, Choi Hong-Il, Kim Nam-Hoon, Jang Woojong, Park Hyun-Seung, Lee Jonghoon, Lee Hyun Oh, Joh Ho Jun, Lee Hyeon Ju, Park Jee Young, Perumal Sampath, Jayakodi Murukarthick, Lee Yun Sun, Kim Backki, Copetti Dario, Kim Soonok, Kim Sunggil, Lim Ki-Byung, Kim Young-Dong, Lee Jungho, Cho Kwang-Su, Park Beom-Seok, Wing Rod A, Yang Tae-Jin

Abstract excerpt

Cytoplasmic chloroplast (cp) genomes and nuclear ribosomal DNA (nR) are the primary sequences used to understand plant diversity and evolution. We introduce a high-throughput method to simultaneously obtain complete cp and nR sequences using Illumina platform whole-genome sequence. We applied the method to 30 rice specimens belonging to nine Oryza species. Concurrent phylogenomic analysis using cp and nR of...

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PMID: 26506948
DOI: 10.1038/srep15655
PMCID: PMC4623524

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