Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Use of Alignment-Free Phylogenetics for Rapid Genome Sequence-Based Typing of Helicobacter pylori Virulence Markers and Antibiotic Susceptibility.

Journal of clinical microbiology - 1 Sept 2015

van Vliet Arnoud H M, Kusters Johannes G

Abstract excerpt

Whole-genome sequencing is becoming a leading technology in the typing and epidemiology of microbial pathogens, but the increase in genomic information necessitates significant investment in bioinformatic resources and expertise, and currently used methodologies struggle with genetically heterogeneous bacteria such as the human gastric pathogen Helicobacter pylori. Here we demonstrate that the alignment-free...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Drug Resistance, Bacterial
Share to Genes, Bacterial

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Genome, Bacterial

Share to Genotyping Techniques

Share to Helicobacter pylori

Share to Molecular Epidemiology

Share to Molecular Typing

Share to Virulence Factors

Source

Open in PubMed Open full text

Identifiers

PMID: 26135867
DOI: 10.1128/JCM.01357-15
PMCID: PMC4540916

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Use of Alignment-Free Phylogenetics for Rapid Genome Sequence-Based Typing of Helicobacter pylori Virulence Markers and Antibiotic Susceptibility.PMID 26135867Read ↗

Use of pan-genome analysis for the identification of lineage-specific genes of Helicobacter pylori.Semantic proximity Read ↗

MetaQuad: Shared Informative Variants Discovery in Metagenomic SamplesSemantic proximity Read ↗

Whole-genome-based <i>Helicobacter pylori</i> geographic surveillance: a visualized and expandable webtoolSemantic proximity Read ↗

genoBASE pylori: a genotype search tool and database of the human gastric pathogen Helicobacter pylori.Semantic proximity Read ↗

Predicting a novel pathogenicity island in Helicobacter pylori by genomic barcoding.Semantic proximity Read ↗

Maast: genotyping thousands of microbial strains efficiently.Semantic proximity Read ↗

Microfluidic PCR combined with pyrosequencing for identification of allelic variants with phenotypic associations among targeted Salmonella genes.Semantic proximity Read ↗

PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees.Semantic proximity Read ↗

Robust Harmonization of Microbiome Studies by Phylogenetic Scaffolding with MaLiAmPiSemantic proximity Read ↗

PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods.Semantic proximity Read ↗

Phylogeny of different Helicobacter pylori strains could not be explained by 16S rRNA gene due to high similarity in gene sequence across strainsSemantic proximity Read ↗

Choosing a Benchtop Sequencing Machine to Characterise Helicobacter pylori GenomesSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.