Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Tn-seq explorer: a tool for analysis of high-throughput sequencing data of transposon mutant libraries.

PloS one - 1 Jan 2015

Solaimanpour Sina, Sarmiento Felipe, Mrázek Jan

Abstract excerpt

Tn-seq is a high throughput technique for analysis of transposon mutant libraries. Tn-seq Explorer was developed as a convenient and easy-to-use package of tools for exploration of the Tn-seq data. In a typical application, the user will have obtained a collection of sequence reads adjacent to transposon insertions in a reference genome. The reads are first aligned to the reference genome using one of the tools...

Topics

Bacteria
Computational Biology
DNA Transposable Elements
Databases, Nucleic Acid
Gene Library
Genomics
High-Throughput Nucleotide Sequencing
Mutation
Software

Source

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Open in PubMed Open full text

Identifiers

PMID: 25938432
DOI: 10.1371/journal.pone.0126070
PMCID: PMC4418687

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 31 Aug 2026.

Community interpretation

Discuss the evidence

Ask a question, add context or challenge an interpretation. Community activity is separate from scientific evidence strength.

0

discussions

0

replies

Citations encouraged

Claims remain attributable.

No discussion yet

Be the first to add a careful, cited interpretation.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Tn-seq explorer: a tool for analysis of high-throughput sequencing data of transposon mutant libraries.PMID 25938432Read ↗

Transposon Insertion Site Sequencing (TIS-Seq): An Efficient and High-Throughput Method for Determining Transposon Insertion Site(s) and Their Relative Abundances in a PiggyBac Transposon Mutant Pool by Next-Generation Sequencing.Semantic proximity Read ↗

A Method for Bioinformatic Analysis of Transposon Insertion Sequencing (INSeq) Results for Identification of Microbial Fitness Determinants.Semantic proximity Read ↗

AlbaTraDIS: Comparative analysis of large datasets from parallel transposon mutagenesis experiments.Semantic proximity Read ↗

TransposonUltimate: software for transposon classification, annotation and detectionSemantic proximity Read ↗

The <i>Mycobacterium tuberculosis</i> transposon sequencing database (MtbTnDB): a large-scale guide to genetic conditional essentialitySemantic proximity Read ↗

Implementation and Data Analysis of Tn-seq, Whole-Genome Resequencing, and Single-Molecule Real-Time Sequencing for Bacterial Genetics.Semantic proximity Read ↗

TnCentral: A Prokaryotic Transposable Element Database and Web Portal for Transposon AnalysisSemantic proximity Read ↗

Transposon Insertion Sequencing, a Global Measure of Gene Function.Semantic proximity Read ↗

Identifying microbial fitness determinants by insertion sequencing using genome-wide transposon mutant libraries.Semantic proximity Read ↗

Mu-seq: sequence-based mapping and identification of transposon induced mutations.Semantic proximity Read ↗

Transposon insertion site sequencing (TIS) of Pseudomonas aeruginosa.Semantic proximity Read ↗

Comprehensive identification of transposable element insertions using multiple sequencing technologies.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.