Article
BAC-End Sequence-Based SNP Mining in Allotetraploid Cotton (Gossypium) Utilizing Resequencing Data, Phylogenetic Inferences, and Perspectives for Genetic Mapping.
G3 (Bethesda, Md.) - 9 Apr 2015
Hulse-Kemp Amanda M, Ashrafi Hamid, Stoffel Kevin, Zheng Xiuting, Saski Christopher A, Scheffler Brian E, Fang David D, Chen Z Jeffrey, Van Deynze Allen, Stelly David M
Abstract excerpt
A bacterial artificial chromosome library and BAC-end sequences for cultivated cotton (Gossypium hirsutum L.) have recently been developed. This report presents genome-wide single nucleotide polymorphism (SNP) mining utilizing resequencing data with BAC-end sequences as a reference by alignment of 12 G. hirsutum L. lines, one G. barbadense L. line, and one G. longicalyx Hutch and Lee line. A total of 132,262...
Topics
- Base Sequence
- Chromosome Mapping
- Chromosomes, Artificial, Bacterial
- Cluster Analysis
- Computer Simulation
- Contig Mapping
- Data Mining
- Diploidy
- Genetic Linkage
- Genetic Loci