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Structural variation (SV)-based pan-genome and GWAS reveal the impacts of SVs on the speciation and diversification of allotetraploid cottons.

Molecular plant - 3 Apr 2023

Jin Shangkun, Han Zegang, Hu Yan, Si Zhanfeng, Dai Fan, He Lu, Cheng Yu, Li Yiqian, Zhao Ting, Fang Lei, Zhang Tianzhen

Abstract excerpt

Structural variations (SVs) have long been described as being involved in the origin, adaption, and domestication of species. However, the underlying genetic and genomic mechanisms are poorly understood. Here, we report a high-quality genome assembly of Gossypium barbadense acc. Tanguis, a landrace that is closely related to formation of extra-long-staple (ELS) cultivated cotton. An SV-based pan-genome (Pan-SV)...

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PMID: 36760124
DOI: 10.1016/j.molp.2023.02.004

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