Design and characterization of a 52K SNP chip for goats.

doi:10.1371/journal.pone.0086227

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Article

Design and characterization of a 52K SNP chip for goats.

PloS one - 1 Jan 2014

Tosser-Klopp Gwenola, Bardou Philippe, Bouchez Olivier, Cabau Cédric, Crooijmans Richard, Dong Yang, Donnadieu-Tonon Cécile, Eggen André, Heuven Henri C M, Jamli Saadiah, Jiken Abdullah Johari, Klopp Christophe, Lawley Cynthia T, McEwan John, Martin Patrice, Moreno Carole R, Mulsant Philippe, Nabihoudine Ibouniyamine, Pailhoux Eric, Palhière Isabelle, Rupp Rachel, Sarry Julien, Sayre Brian L, Tircazes Aurélie, Jun Wang, Wang Wen, Zhang Wenguang

Abstract excerpt

The success of Genome Wide Association Studies in the discovery of sequence variation linked to complex traits in humans has increased interest in high throughput SNP genotyping assays in livestock species. Primary goals are QTL detection and genomic selection. The purpose here was design of a 50-60,000 SNP chip for goats. The success of a moderate density SNP assay depends on reliable bioinformatic SNP detection...

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PMID: 24465974
DOI: 10.1371/journal.pone.0086227
PMCID: PMC3899236

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