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A versatile high-density customized SNP array for augmenting genomic analysis in sheep.

Genome - 1 Jan 2026

Arora Reena, Sharma Upasna, Vijh R K, Chhabra Pooja, Yadav D K, Nachiappan R K, Sharma Rekha, Ahlawat Sonika, Shanaz Syed, Mir Mohsin Ayoub, Kumar Ashish, Kaur Mandeep

Abstract excerpt

We designed a genome-wide high-density SNP array using genetically diverse sheep of the Indian subcontinent. The array includes 627 509 biallelic markers and was validated on 522 individuals from diverse breeds of the Indian peninsula. The average call rate for samples passing quality control was 99.6%, with 96.15% (603 523) markers classified as best and recommended. The high-density SNP array offers dense...

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PMID: 41861391
DOI: 10.1139/gen-2025-0078

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