Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing.

The Journal of antimicrobial chemotherapy - 1 Apr 2013

Zankari Ea, Hasman Henrik, Kaas Rolf Sommer, Seyfarth Anne Mette, Agersø Yvonne, Lund Ole, Larsen Mette Voldby, Aarestrup Frank M

Abstract excerpt

OBJECTIVES: Antimicrobial susceptibility testing of bacterial isolates is essential for clinical diagnosis, to detect emerging problems and to guide empirical treatment. Current phenotypic procedures are sometimes associated with mistakes and may require further genetic testing. Whole-genome sequencing (WGS) may soon be within reach even for routine surveillance and clinical diagnostics. The aim of this study was...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Computational Biology
Share to Escherichia coli

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Genome, Bacterial

Share to Microbial Sensitivity Tests

Share to Multilocus Sequence Typing

Share to Salmonella typhimurium

Share to Sequence Analysis, DNA

Source

Identifiers

PMID: 23233485
DOI: 10.1093/jac/dks496

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 6 Sept 2026. Manifest publication-graph-cohort-2026-09-06.1.

Source receipt: pubmed, retrieved 6 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing.PMID 23233485Read ↗

Use of whole genome sequencing of commensal Escherichia coli in pigs for antimicrobial resistance surveillance, United Kingdom, 2018.Semantic proximity Read ↗

Determining antimicrobial susceptibility in Salmonella enterica serovar Typhimurium through whole genome sequencing: a comparison against multiple phenotypic susceptibility testing methodsSemantic proximity Read ↗

One Day in Denmark: Comparison of Phenotypic and Genotypic Antimicrobial Susceptibility Testing in Bacterial Isolates From Clinical SettingsSemantic proximity Read ↗

Benchmarking of methods for identification of antimicrobial resistance genes in bacterial whole genome data.Semantic proximity Read ↗

Whole-genome sequencing to control antimicrobial resistanceSemantic proximity Read ↗

Whole-Genome Sequencing for Detecting Antimicrobial Resistance in Nontyphoidal Salmonella.Semantic proximity Read ↗

A study of the correlation between phenotypic antimicrobial susceptibility testing methods and the associated genotypes determined by whole genome sequencing for a collection of <i>Escherichia coli</i> of bovine originSemantic proximity Read ↗

Comparison of genotypic and phenotypic antimicrobial resistance profiles of Salmonella enterica isolates from poultry diagnostic specimens.Semantic proximity Read ↗

ResFinder 4.0 for predictions of phenotypes from genotypes.Semantic proximity Read ↗

Genomic characterization of antimicrobial resistance in mcr-carrying ESBL-producing Escherichia coli from pigs and humansSemantic proximity Read ↗

WGS accurately predicts antimicrobial resistance in Escherichia coli.Semantic proximity Read ↗

Genomics accurately predicts antimicrobial resistance in Staphylococcus pseudintermedius collected as part of Vet-LIRN resistance monitoring.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.