Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

SNPs in stress-responsive rice genes: validation, genotyping, functional relevance and population structure.

BMC genomics - 25 Aug 2012

Parida Swarup K, Mukerji Mitali, Singh Ashok K, Singh Nagendra K, Mohapatra Trilochan

Abstract excerpt

BACKGROUND: Single nucleotide polymorphism (SNP) validation and large-scale genotyping are required to maximize the use of DNA sequence variation and determine the functional relevance of candidate genes for complex stress tolerance traits through genetic association in rice. We used the bead array platform-based Illumina GoldenGate assay to validate and genotype SNPs in a select set of stress-responsive genes to...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Adaptation, Physiological
Share to Genes, Plant

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Genotyping Techniques

Share to Oligonucleotide Array Sequence Analysis

Share to Reproducibility of Results

Share to Species Specificity

Share to Stress, Physiological

Source

Open in PubMed Open full text

Identifiers

PMID: 22921105
DOI: 10.1186/1471-2164-13-426
PMCID: PMC3562522

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

SNPs in stress-responsive rice genes: validation, genotyping, functional relevance and population structure.PMID 22921105Read ↗

Genomewide discovery of DNA polymorphisms in rice cultivars with contrasting drought and salinity stress response and their functional relevance.Semantic proximity Read ↗

A strategy for genome-wide identification of gene based polymorphisms in rice reveals non-synonymous variation and functional genotypic markers.Semantic proximity Read ↗

A genomic perspective on the important genetic mechanisms of upland adaptation of rice.Semantic proximity Read ↗

Genomewide SNP variation reveals relationships among landraces and modern varieties of rice.Semantic proximity Read ↗

Genetic analysis for detection of genes associated to drought tolerance in rice accessions belonging to north east India.Semantic proximity Read ↗

Whole genome sequence analysis of rice genotypes with contrasting response to salinity stress.Semantic proximity Read ↗

Association mapping of drought tolerance and agronomic traits in rice (Oryza sativa L.) landraces.Semantic proximity Read ↗

Genome-wide association studies to identify rice salt-tolerance markers.Semantic proximity Read ↗

Open access resources for genome-wide association mapping in rice.Semantic proximity Read ↗

Genome-wide discovery of genetic variations between rice cultivars with contrasting drought stress response and their potential functional relevance.Semantic proximity Read ↗

Lineage-specific variation and molecular evolution in the rice landrace Thavalakannan: an in silico framework for identifying candidate flood resilience-associated variants.Semantic proximity Read ↗

Genome-wide association studies of 14 agronomic traits in rice landraces.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.