Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

A novel approach for mining polymorphic microsatellite markers in silico.

PloS one - 1 Jan 2011

Hoffman Joseph I, Nichols Hazel J

Abstract excerpt

An important emerging application of high-throughput 454 sequencing is the isolation of molecular markers such as microsatellites from genomic DNA. However, few studies have developed microsatellites from cDNA despite the added potential for targeting candidate genes. Moreover, to develop microsatellites usually requires the evaluation of numerous primer pairs for polymorphism in the focal species. This can be...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Antarctic Regions
Share to Computational Biology
Share to Genetic Loci

Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

Share to Genetic Markers

Share to Linear Models

Share to Microsatellite Repeats

Share to Polymerase Chain Reaction

Share to Trinucleotide Repeats

Source

Open in PubMed Open full text

Identifiers

PMID: 21853104
DOI: 10.1371/journal.pone.0023283
PMCID: PMC3154332

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence. Graph snapshot: 2026-09-29.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

A novel approach for mining polymorphic microsatellite markers in silico.PMID 21853104Read ↗

A 90K SNP array uncovers inbreeding and cryptic relatedness in an Antarctic fur seal breeding colonySemantic proximity Read ↗

Transcriptomic SNP discovery for custom genotyping arrays: impacts of sequence data, SNP calling method and genotyping technology on the probability of validation success.Semantic proximity Read ↗

Rates of assay success and genotyping error when single nucleotide polymorphism genotyping in non-model organisms: a case study in the Antarctic fur seal.Semantic proximity Read ↗

Current trends in microsatellite genotyping.Semantic proximity Read ↗

An 85K SNP Array Uncovers Inbreeding and Cryptic Relatedness in an Antarctic Fur Seal Breeding Colony.Semantic proximity Read ↗

Intronic primers reveal unexpectedly high major histocompatibility complex diversity in Antarctic fur seals.Semantic proximity Read ↗

Gene discovery in the Antarctic fur seal (Arctocephalus gazella) skin transcriptome.Semantic proximity Read ↗

High-throughput microsatellite genotyping in ecology: improved accuracy, efficiency, standardization and success with low-quantity and degraded DNA.Semantic proximity Read ↗

A rapid and cost-effective approach for the development of polymorphic microsatellites in non-model species using paired-end RAD sequencing.Semantic proximity Read ↗

Scoring microsatellite loci.Semantic proximity Read ↗

A draft fur seal genome provides insights into factors affecting SNP validation and how to mitigate them.Semantic proximity Read ↗

Cross-amplification and validation of SNPs conserved over 44 million years between seals and dogs.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.