Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Investigating the global genomic diversity of Escherichia coli using a multi-genome DNA microarray platform with novel gene prediction strategies.

BMC genomics - 6 Jul 2011

Jackson Scott A, Patel Isha R, Barnaba Tammy, LeClerc Joseph E, Cebula Thomas A

Abstract excerpt

BACKGROUND: The gene content of a diverse group of 183 unique Escherichia coli and Shigella isolates was determined using the Affymetrix GeneChip® E. coli Genome 2.0 Array, originally designed for transcriptome analysis, as a genotyping tool. The probe set design utilized by this array provided the opportunity to determine the gene content of each strain very accurately and reliably. This array constitutes 10,112...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Cluster Analysis
Share to Escherichia coli

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Genetic Variation

Share to Genome, Bacterial

Share to Oligonucleotide Array Sequence Analysis

Share to Phylogeny

Share to Principal Component Analysis

Share to Shigella

Source

Open in PubMed Open full text

Identifiers

PMID: 21733163
DOI: 10.1186/1471-2164-12-349
PMCID: PMC3146454

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Investigating the global genomic diversity of Escherichia coli using a multi-genome DNA microarray platform with novel gene prediction strategies.PMID 21733163Read ↗

FDA Escherichia coli Identification (FDA-ECID) Microarray: a Pangenome Molecular Toolbox for Serotyping, Virulence Profiling, Molecular Epidemiology, and Phylogeny.Semantic proximity Read ↗

Genomic DNA microarrays for Entamoeba histolytica: applications for use in expression profiling and strain genotyping.Semantic proximity Read ↗

Extensive gene diversity in septicemic Escherichia coli strains.Semantic proximity Read ↗

Rapid microarray‐based DNA genoserotyping of Escherichia coliSemantic proximity Read ↗

Extensive genomic diversity in pathogenic Escherichia coli and Shigella Strains revealed by comparative genomic hybridization microarray.Semantic proximity Read ↗

Interrogating genomic diversity of E. coli O157:H7 using DNA tiling arrays.Semantic proximity Read ↗

Genetic diversity among Escherichia coli O157:H7 isolates and identification of genes linked to human infections.Semantic proximity Read ↗

Complexity of the genomic diversity in enterohemorrhagic Escherichia coli O157 revealed by the combinational use of the O157 Sakai OligoDNA microarray and the Whole Genome PCR scanning.Semantic proximity Read ↗

Survey of genomic diversity among Enterococcus faecalis strains by microarray-based comparative genomic hybridization.Semantic proximity Read ↗

Analysis of genome plasticity in pathogenic and commensal Escherichia coli isolates by use of DNA arrays.Semantic proximity Read ↗

Genomic anatomy of Escherichia coli O157:H7 outbreaks.Semantic proximity Read ↗

Rapid identification of Escherichia coli pathotypes by virulence gene detection with DNA microarrays.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.