Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Comparative performance of the REGA subtyping tool version 2 versus version 1.

Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases - 1 Apr 2010

Abecasis Ana B, Wang Yunpeng, Libin Pieter, Imbrechts Stijn, de Oliveira Tulio, Camacho Ricardo J, Vandamme Anne-Mieke

Abstract excerpt

The REGA HIV-1 subtyping tool is a phylogenetic-based method for subtyping HIV-1 genomic sequences that was published in 2005. The subtyping tool combines phylogenetic approaches with recombination detection methods. Recently, version 2 was released (http://www.bioafrica.net/rega-genotype/html/index.html) as an improvement of version 1. Version 2 implements a Decision-Tree-based algorithm that was not implemented...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Electronic Data Processing
Share to False Negative Reactions

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to False Positive Reactions

Share to Genome, Viral

Share to Pattern Recognition, Automated

Share to pol Gene Products, Human Immunodeficiency Virus

Share to Sensitivity and Specificity

Share to Sequence Analysis

Source

Identifiers

PMID: 19822224
DOI: 10.1016/j.meegid.2009.09.020

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Comparative performance of the REGA subtyping tool version 2 versus version 1.PMID 19822224Read ↗

Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: Performance evaluation of the new REGA version 3 and seven other toolsSemantic proximity Read ↗

An automated genotyping system for analysis of HIV-1 and other microbial sequences.Semantic proximity Read ↗

Reliability of rapid subtyping tools compared to that of phylogenetic analysis for characterization of human immunodeficiency virus type 1 non-B subtypes and recombinant forms.Semantic proximity Read ↗

Sensitivity of seven HIV subtyping tools differs among subtypes/recombinants in the Spanish cohort of naïve HIV-infected patients (CoRIS).Semantic proximity Read ↗

Clinical evaluation of Rega 8: an updated genotypic interpretation system that significantly predicts HIV-therapy response.Semantic proximity Read ↗

Comparative HIV-1 Phylogenies Characterized by PR/RT, Pol and Near-Full-Length Genome Sequences.Semantic proximity Read ↗

A standardized framework for accurate, high-throughput genotyping of recombinant and non-recombinant viral sequences.Semantic proximity Read ↗

Discrepancies in assignment of subtype/recombinant forms by genotyping programs for HIV type 1 drug resistance testing may falsely predict superinfection.Semantic proximity Read ↗

A Comparative Analysis of the different HIV Testing Techniques used in Zambia: Data from a Clinical Performance StudySemantic proximity Read ↗

HIV-1 genotypic resistance: automated sequence analysis and interpretation.Semantic proximity Read ↗

Genotyping of B and non-B subtypes of human immunodeficiency virus type 1.Semantic proximity Read ↗

Automating HIV drug resistance genotyping with RECall, a freely accessible sequence analysis tool.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.