Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Translation initiation modeling and mutational analysis based on the 3(')-end of the Escherichia coli 16S rRNA sequence.

Bio Systems - 1 Apr 2009

Dawy Zaher, Morcos Faruck, Weindl Johanna, Mueller Jakob C

Abstract excerpt

A model for the process of translation in gene expression is proposed. The model is based on the assumption that the ribosome decodes the mRNA sequences using consecutive subsequences of the 3(')-end of its 16S rRNA subunit. The biological consistency of the model is validated by successful detection of the Shine-Dalgarno signal and the start codon. Furthermore, implications on the role of the 3(')-end in the...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Codon, Initiator
Share to Computer Simulation
Share to Escherichia coli

Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

Share to Models, Genetic

Share to Protein Biosynthesis

Share to RNA, Bacterial

Share to RNA, Ribosomal, 16S

Share to Sequence Analysis, RNA

Source

Identifiers

PMID: 19070645
DOI: 10.1016/j.biosystems.2008.11.008

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence. Graph snapshot: 2026-09-29.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Translation initiation modeling and mutational analysis based on the 3(')-end of the Escherichia coli 16S rRNA sequence.PMID 19070645Read ↗

Codon and base biases after the initiation codon of the open reading frames in the Escherichia coli genome and their influence on the translation efficiency.Semantic proximity Read ↗

Genome scale analysis of Escherichia coli with a comprehensive prokaryotic sequence-based biophysical model of translation initiation and elongation.Semantic proximity Read ↗

A novel coding method for gene mutation correction during protein translation process.Semantic proximity Read ↗

Effect of mutations on the detection of translational signals based on a communications theory approach.Semantic proximity Read ↗

Defining the high-translational readthrough stop codon contextSemantic proximity Read ↗

Statistical Analysis of Readthrough Levels for Nonsense Mutations in Mammalian Cells Reveals a Major Determinant of Response to GentamicinSemantic proximity Read ↗

An evolutionarily conserved element in initiator tRNAs prompts ultimate steps in ribosome maturation.Semantic proximity Read ↗

Distinctive contributions of the ribosomal P-site elements m2G966, m5C967 and the C-terminal tail of the S9 protein in the fidelity of initiation of translation in Escherichia coli.Semantic proximity Read ↗

The involvement of base 1054 in 16S rRNA for UGA stop codon dependent translational termination.Semantic proximity Read ↗

Shine-Dalgarno sequence of bacteriophage T4: GAGG prevails in early genes.Semantic proximity Read ↗

An extended Shine-Dalgarno sequence in mRNA functionally bypasses a vital defect in initiator tRNA.Semantic proximity Read ↗

A single mutation in the IF3 N-terminal domain perturbs the fidelity of translation initiation at three levels.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.