SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation.

doi:10.1093/bioinformatics/btm192

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Article

SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation.

Bioinformatics (Oxford, England) - 1 Jul 2007

Panitz Frank, Stengaard Henrik, Hornshøj Henrik, Gorodkin Jan, Hedegaard Jakob, Cirera Susanna, Thomsen Bo, Madsen Lone B, Høj Anette, Vingborg Rikke K, Zahn Bujie, Wang Xuegang, Wang Xuefei, Wernersson Rasmus, Jørgensen Claus B, Scheibye-Knudsen Karsten, Arvin Troels, Lumholdt Steen, Sawera Milena, Green Trine, Nielsen Bente J, Havgaard Jakob H, Brunak Søren, Fredholm Merete, Bendixen Christian

Abstract excerpt

MOTIVATION: Single nucleotide polymorphisms (SNPs) analysis is an important means to study genetic variation. A fast and cost-efficient approach to identify large numbers of novel candidates is the SNP mining of large scale sequencing projects. The increasing availability of sequence trace data in public repositories makes it feasible to evaluate SNP predictions on the DNA chromatogram level. MAVIANT, a...

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PMID: 17646321
DOI: 10.1093/bioinformatics/btm192

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