Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

TFAM detects co-evolution of tRNA identity rules with lateral transfer of histidyl-tRNA synthetase.

Nucleic acids research - 1 Jan 2006

Ardell David H, Andersson Siv G E

Abstract excerpt

We present TFAM, an automated, statistical method to classify the identity of tRNAs. TFAM, currently optimized for bacteria, classifies initiator tRNAs and predicts the charging identity of both typical and atypical tRNAs such as suppressors with high confidence. We show statistical evidence for extensive variation in tRNA identity determinants among bacterial genomes due to variation in overall tDNA base...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Alphaproteobacteria
Share to Databases, Nucleic Acid
Share to DNA, Bacterial

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Gene Transfer, Horizontal

Share to Genome, Bacterial

Share to Models, Statistical

Share to RNA, Transfer

Share to RNA, Transfer, Met

Source

Open in PubMed Open full text

Identifiers

PMID: 16473847
DOI: 10.1093/nar/gkj449
PMCID: PMC1363771

Genes

TFAM

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 6 Sept 2026. Manifest publication-graph-cohort-2026-09-06.1.

Source receipt: pubmed, retrieved 6 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

TFAM detects co-evolution of tRNA identity rules with lateral transfer of histidyl-tRNA synthetase.PMID 16473847Read ↗

TFAM 1.0: an online tRNA function classifier.Semantic proximity Read ↗

Mapping the tRNA modification landscape of Bartonella henselae Houston I and Bartonella quintana ToulouseSemantic proximity Read ↗

Dynamics of diversified A-to-I editing in <i>Streptococcus pyogenes</i> is governed by changes in mRNA stabilitySemantic proximity Read ↗

Mapping the tRNA Modification Landscape of <i>Bartonella henselae</i> Houston I and <i>Bartonella quintana</i> ToulouseSemantic proximity Read ↗

A tRNA modification in Mycobacterium tuberculosis facilitates optimal intracellular growthSemantic proximity Read ↗

A tRNA modification in Mycobacterium tuberculosis facilitates optimal intracellular growthSemantic proximity Read ↗

A tRNA modification in <i>Mycobacterium tuberculosis</i> facilitates optimal intracellular growthSemantic proximity Read ↗

Plasticity and diversity of tRNA anticodon determinants of substrate recognition by eukaryotic A37 isopentenyltransferases.Semantic proximity Read ↗

Allelic variation at tRNA genes in three nematode species indicates mutation load despite strong purifying selectionSemantic proximity Read ↗

Diversity of tRNA genes in eukaryotes.Semantic proximity Read ↗

Allelic Variation at tRNA Genes in Three Nematode Species Indicates Mutation Load Despite Strong Purifying Selection.Semantic proximity Read ↗

GtRNAdb 2.0: an expanded database of transfer RNA genes identified in complete and draft genomes.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.