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Article

A new measure to study phylogenetic relations in the brown algal order Ectocarpales: the "codon impact parameter".

Journal of biosciences - 1 Dec 2005

Das Smarajit, Chakrabarti Jayprokas, Ghosh Zhumur, Sahoo Satyabrata, Mallick Bibekanand

Abstract excerpt

We analyse forty-seven chloroplast genes of the large subunit of RuBisCO, from the algal order Ectocarpales, sourced from GenBank. Codon-usage weighted by the nucleotide base-bias defines our score called the codon-impact-parameter. This score is used to obtain phylogenetic relations amongst the 47 Ectocarpales. We compare our classification with the ones done earlier.

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Share to Base Composition
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Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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Share to Ribulose-Bisphosphate Carboxylase

Share to Sequence Analysis, DNA

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Source

Identifiers

PMID: 16388144
DOI: 10.1007/BF02703570

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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