Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

SOP3v2: web-based selection of oligonucleotide primer trios for genotyping of human and mouse polymorphisms.

Nucleic acids research - 1 Jul 2005

Ringquist Steven, Pecoraro Christopher, Gilchrist Crystal M S, Styche Alexis, Rudert William A, Benos Panagiotis V, Trucco Massimo

Abstract excerpt

SOP3v2 is a database-driven graphical web-based application for facilitating genotyping assay design. SOP3v2 accepts data input in numerous forms, including gene names, reference sequence numbers and physical location. For each entry, the application presents a set of recommended forward and reverse PCR primers, along with a sequencing primer, which is optimized for sequence-based genotyping assays....

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to DNA Primers
Share to Genomics

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Internet

Share to Oligonucleotide Probes

Share to Polymerase Chain Reaction

Share to Polymorphism, Genetic

Share to Software

Share to User-Computer Interface

Source

Open in PubMed Open full text

Identifiers

PMID: 15980532
DOI: 10.1093/nar/gki483
PMCID: PMC1160243

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 6 Sept 2026. Manifest publication-graph-cohort-2026-09-06.1.

Source receipt: pubmed, retrieved 6 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

SOP3v2: web-based selection of oligonucleotide primer trios for genotyping of human and mouse polymorphisms.PMID 15980532Read ↗

Web-based primer design software for genome-scale genotyping by pyrosequencing.Semantic proximity Read ↗

SOP3: a web-based tool for selection of oligonucleotide primers for single nucleotide polymorphism analysis by Pyrosequencing.Semantic proximity Read ↗

The PCR suite.Semantic proximity Read ↗

PrimerMapper: high throughput primer design and graphical assembly for PCR and SNP detection.Semantic proximity Read ↗

SNPbox: a modular software package for large-scale primer design.Semantic proximity Read ↗

WASP: a Web-based Allele-Specific PCR assay designing tool for detecting SNPs and mutations.Semantic proximity Read ↗

SNPbox: web-based high-throughput primer design with an eye for repetitive sequences.Semantic proximity Read ↗

Pharmosome: an integrative and collective database for exploration and analysis of single nucleotide polymorphisms associated with diseaseSemantic proximity Read ↗

SNPCEQer II: the integrated detection and analysis of SNPs in DNA sequences.Semantic proximity Read ↗

RExPrimer: an integrated primer designing tool increases PCR effectiveness by avoiding 3' SNP-in-primer and mis-priming from structural variation.Semantic proximity Read ↗

Web-based primer design for single nucleotide polymorphism analysis.Semantic proximity Read ↗

Primer design for PCR and sequencing in high-throughput analysis of SNPs.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.