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Article

Single-feature polymorphism discovery in the barley transcriptome.

Genome biology - 1 Jan 2005

Rostoks Nils, Borevitz Justin O, Hedley Peter E, Russell Joanne, Mudie Sharon, Morris Jenny, Cardle Linda, Marshall David F, Waugh Robbie

Abstract excerpt

A probe-level model for analysis of GeneChip gene-expression data is presented which identified more than 10,000 single-feature polymorphisms (SFP) between two barley genotypes. The method has good sensitivity, as 67% of known single-nucleotide polymorphisms (SNP) were called as SFPs. This method is applicable to all oligonucleotide microarray data, accounts for SNP effects in gene-expression data and represents...

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Identifiers

PMID: 15960806
DOI: 10.1186/gb-2005-6-6-r54
PMCID: PMC1175974

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 6 Sept 2026. Manifest publication-graph-cohort-2026-09-06.1.

Source receipt: pubmed, retrieved 6 Sept 2026.

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