Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Cytoscape: a software environment for integrated models of biomolecular interaction networks.

Genome research - 1 Nov 2003

Shannon Paul, Markiel Andrew, Ozier Owen, Baliga Nitin S, Wang Jonathan T, Ramage Daniel, Amin Nada, Schwikowski Benno, Ideker Trey

Abstract excerpt

Cytoscape is an open source software project for integrating biomolecular interaction networks with high-throughput expression data and other molecular states into a unified conceptual framework. Although applicable to any system of molecular components and interactions, Cytoscape is most powerful when used in conjunction with large databases of protein-protein, protein-DNA, and genetic interactions that are...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Archaeal Proteins
Share to Bacteriophage lambda

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Halobacterium

Share to Internet

Share to Neural Networks, Computer

Share to Software

Share to Software Design

Share to Stochastic Processes

Source

Open in PubMed Open full text

Identifiers

PMID: 14597658
DOI: 10.1101/gr.1239303
PMCID: PMC403769

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Cytoscape: a software environment for integrated models of biomolecular interaction networks.PMID 14597658Read ↗

Integration of genomic information with biological networks using Cytoscape.Semantic proximity Read ↗

ReactomeFIViz: a Cytoscape app for pathway and network-based data analysisSemantic proximity Read ↗

Protein interaction networks.Semantic proximity Read ↗

StrongestPath: a Cytoscape application for protein-protein interaction analysisSemantic proximity Read ↗

Multiplex mapping of protein-protein interaction interfacesSemantic proximity Read ↗

Expanding TheCellMap.org to visualize a genome-scale genetic interaction network for a human cell lineSemantic proximity Read ↗

ExprEssence - Revealing the essence of differential experimental data in the context of an interaction/regulation net-workSemantic proximity Read ↗

Mapping biological process relationships and disease perturbations within a pathway networkSemantic proximity Read ↗

Mapping the Human Proteome with Physical Access to DNASemantic proximity Read ↗

ProteinWeaver: A Webtool to Visualize Ontology-Annotated Protein NetworksSemantic proximity Read ↗

The BioGRID interaction database: 2017 updateSemantic proximity Read ↗

A computational framework to explore cellular response mechanisms from multi-omics datasetsSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.