Article

Estimation of secondary household attack rates for emergent SARS-CoV-2 variants detected by genomic surveillance at a community-based testing site in San Francisco

2021-03-03

Abstract excerpt

<h4>ABSTRACT</h4> <h4>Background</h4> Sequencing of the SARS-CoV-2 viral genome from patient samples is an important epidemiological tool for monitoring and responding to the pandemic, including the emergence of new mutations in specific communities. <h4>Methods</h4> SARS-CoV-2 genomic sequences were generated from positive samples collected, along with epidemiological metadata, at a walk-up, rapid testing site in...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: fec0c187-cf0c-55f9-b1e8-aa2e9d87da0b
DOI: 10.1101/2021.03.01.21252705

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Estimation of secondary household attack rates for emergent SARS-CoV-2 variants detected by genomic surveillance at a community-based testing site in San FranciscoDOI 10.1101/2021.03.01.21252705Read

Tracking the prevalence and emergence of SARS-CoV-2 variants of concern using a regional genomic surveillance programSemantic proximity Read

Local monitoring of SARS-CoV-2 Variants in Two Large California Counties in 2021Semantic proximity Read

Tracking the prevalence and emergence of SARS CoV2 variants of concern using a regional genomic surveillance programSemantic proximity Read

Genomic surveillance of SARS-CoV-2 during the first year of the pandemic in the Bronx enabled clinical and epidemiological inferenceSemantic proximity Read

Analysis of SARS-CoV-2 Genomes from Southern California Reveals Community Transmission Pathways in the Early Stage of the US COVID-19 PandemicSemantic proximity Read

Changes in Transmission and Symptoms of SARS-CoV-2 in United States Households, April 2020–September 2022Semantic proximity Read

Genomic and epidemiologic characteristics of SARS-CoV-2 persistent infections in California, January 2021 - July 2023.Semantic proximity Read

Comparative Household Secondary Attack Rates associated with B.1.1.7, B.1.351, and P.1 SARS-CoV-2 VariantsSemantic proximity Read

Household Transmission of SARS-CoV-2: A Prospective Longitudinal Study Showing Higher Viral Load and Increased Transmissibility of the Alpha Variant Compared to Previous StrainsSemantic proximity Read

Genomic Surveillance for SARS-CoV-2 During the COVID-19 Pandemic: Collaborative Experience at Southeast MichiganSemantic proximity Read

Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern CaliforniaSemantic proximity Read

Using genomic epidemiology of SARS-CoV-2 to support contact tracing and public health surveillance in rural Humboldt County, CaliforniaSemantic proximity Read