Article

Rawcopy: Improved copy number analysis with Affymetrix arrays

2015-10-22

Abstract excerpt

Rawcopy is an R package for processing of Affymetrix CytoScan HD, CytoScan 750k and SNP 6.0 microarray raw intensities (CEL files). It uses data from a large number of reference samples to produce log ratio for total copy number analysis and B-allele frequency for allele-specific copy number and heterozygosity analysis. Rawcopy achieves higher signal-to-noise ratio than commonly used free and proprietary alternati...

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Literature Corpus work: f766f5df-7c55-5a7a-9ec2-1aa32e113815
DOI: 10.1101/027409

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