Article

A platform for deep learning on (meta)genomic sequences

2023-02-09

Abstract excerpt

<title>Abstract</title> <p>We describe deepG, a platform for the generation, interpretation, and application of deep learning models for sequence labeling, classification, and regression based on nucleotide sequences. Unlike other bioinformatic deep learning platforms that focus on training on the human genome, deepG can handle sets of (meta)genomes via a range of data augmentation strategies, allowing for the tr...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: eededa7f-cc7f-57d6-ae58-da34db31180f
DOI: 10.21203/rs.3.rs-2527258/v1

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

A platform for deep learning on (meta)genomic sequencesDOI 10.21203/rs.3.rs-2527258/v1Read

Deep learning methods in metagenomics: a reviewSemantic proximity Read

A Deep Learning Model for Predicting NGS Sequencing Depth from DNA SequenceSemantic proximity Read

A Systematic Review: Deep Learning for Analyzing Genomic Data to Discover Evolutionary PatternsSemantic proximity Read

Using Deep Learning for Gene Detection and Classification in Raw Nanopore SignalsSemantic proximity Read

A deep learning model embedded framework to distinguish DNA and RNA mutations directly from RNA-seqSemantic proximity Read

Cnngeno: A high-precision deep learning based strategy for the calling of structural variation genotype.Semantic proximity Read

Hybrid BiGRU-BiLSTM Model for Robust Gene Sequence Classification: Leveraging K-Mer Preprocessing and Comprehensive EvaluationSemantic proximity Read

Genomic Touchstone: Benchmarking Genomic Language Models in the Context of the Central DogmaSemantic proximity Read

Creating a universal SNP and small indel variant caller with deep neural networksSemantic proximity Read

An automated framework for efficiently designing deep convolutional neural networks in genomicsSemantic proximity Read

A deep learning model for predicting next-generation sequencing depth from DNA sequence.Semantic proximity Read

Generalizing predictions to unseen sequencing profiles via deep generative modelsSemantic proximity Read