Article
Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index
2017-11-10
Abstract excerpt
<h4>Motivation</h4> Sequence-level searches on large collections of RNA-seq experiments, such as the NIH Sequence Read Archive (SRA), would enable one to ask many questions about the expression or variation of a given transcript in a population. Bloom filter-based indexes and variants, such as the Sequence Bloom Tree, have been proposed in the past to solve this problem. However, these approaches suffer from fund...
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Identifiers and source
- Literature Corpus work
- e606d776-d20c-5166-a341-a118ed117a5a
- DOI
- 10.1101/217372