Article

A Method of Identification of SARS-CoV-2 Variant Using NCBI BLAST-2 100% Homology Search with Specific Oligonucleotides Selected at the Deletion Boundaries of S, N, ORF7a, ORF8 and ORF1ab Proteins

2022-09-22

Abstract excerpt

Genomic sequencing of many SARS-CoV-2 variants with higher transmission and immune-escape were reported due to point mutations and deletions. Thus, whether a newly sequenced SARS-CoV-2 belongs to Alpha, Beta, Gamma, Delta, or Omicron (BA.1, BA.2, BA.4 and BA.5) variants must be known. We multi-aligned the different Spike, ORF1ab and Nucleocapsid proteins of those corona virus variants and detected different lineag...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: dd619c27-cf19-5099-8854-31db98c0002f
DOI: 10.21203/rs.3.rs-2082525/v1

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

A Method of Identification of SARS-CoV-2 Variant Using NCBI BLAST-2 100% Homology Search with Specific Oligonucleotides Selected at the Deletion Boundaries of S, N, ORF7a, ORF8 and ORF1ab ProteinsDOI 10.21203/rs.3.rs-2082525/v1Read

Elucidation of Genome Polymorphisms in Emerging SARS-CoV-2Semantic proximity Read

Genome composition and genetic characterization of SARS-CoV-2Semantic proximity Read

Consensus insertion/deletions and amino acid variations of all coding and noncoding regions of the SARS-CoV-2 Omicron clades, including the XBB and BQ.1 lineagesSemantic proximity Read

In-depth genomic characterisation of SARS-CoV-2 variants from Egypt exhibited heterogeneous lineages.Semantic proximity Read

Comparison Of SARS-CoV-2 Virus Variant Genomes Detected In China and USASemantic proximity Read

Whole genome analysis of more than 10 000 SARS-CoV-2 virus unveils global genetic diversity and target region of NSP6.Semantic proximity Read

The Gene Sequence of the Proteins of SARS-CoV-2Semantic proximity Read

Proteo-genomic analysis of SARS-CoV-2: A clinical landscape of SNPs, COVID-19 proteome and host responsesSemantic proximity Read

Quantitative Mutation Analysis of Genes and Proteins of Major SARS-CoV-2 Variants of Concern and Interest.Semantic proximity Read

Evaluation of Genomic Surveillance of SARS-CoV-2 Virus Isolates and Comparison of Mutational Spectrum of Variants in BangladeshSemantic proximity Read

Genomic analysis of SARS-CoV-2 variants: diagnosis and vaccination challenges.Semantic proximity Read

Genetic Conservation and Diversity of SARS-CoV-2 Envelope Gene Across Variants of Concern.Semantic proximity Read