Article

The FunCoup Cytoscape App: multi-species network analysis and visualization

2024-10-05

Abstract excerpt

<h4>ABSTRACT</h4> <h4>Summary</h4> Functional association networks, such as FunCoup, are crucial for analyzing complex gene interactions. To facilitate the analysis and visualization of such genome-wide networks, there is a need for seamless integration with powerful network analysis tools like Cytoscape. The FunCoup Cytoscape App integrates the FunCoup web service API with Cytoscape, allowing users to visualize...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: c5231346-21ac-5ae0-b931-2d26a970ca08
DOI: 10.1101/2024.10.04.616627

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

The FunCoup Cytoscape App: multi-species network analysis and visualizationDOI 10.1101/2024.10.04.616627Read

FunCoup 6: advancing functional association networks across species with directed links and improved user experienceSemantic proximity Read

EGIDExpress: An Interactive Shiny Web App to Visualize and Share Large Biological DatasetsSemantic proximity Read

NaviCell Web Service for network-based data visualization.Semantic proximity Read

Proteinarium: Multi-Sample Protein-Protein Interaction Analysis and Visualization ToolSemantic proximity Read

iCTNet: a Cytoscape plugin to produce and analyze integrative complex traits networks.Semantic proximity Read

TCGAnalyzeR: a web application for integrative visualization of molecular and clinical data of cancer patients for cohort and associated gene discoverySemantic proximity Read

RingNet: An Interactive Platform for Multi-Modal Data Visualization in NetworksSemantic proximity Read

CoMut: Visualizing integrated molecular information with comutation plotsSemantic proximity Read

Coral: Clear and customizable visualization of human kinome dataSemantic proximity Read

Automation of ReactomeFIViz via CyREST APISemantic proximity Read

Integration of genomic information with biological networks using Cytoscape.Semantic proximity Read

iCAVE: an open source tool for immersive 3D visualization of complex biomolecular interaction networksSemantic proximity Read