Article

HMP16SData: Efficient Access to the Human Microbiome Project through Bioconductor

2018-04-17

Abstract excerpt

Phase 1 of the NIH Human Microbiome Project (HMP) investigated 18 body subsites of 239 healthy American adults, to produce the first comprehensive reference for the composition and variation of the “healthy” human microbiome. Publicly-available data sets from amplicon sequencing of two 16S rRNA variable regions, with extensive controlled-access participant data, provide a reference for ongoing microbiome studies....

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: ac44b2eb-88c6-5f4e-991a-3510a93c0e99
DOI: 10.1101/299115

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

HMP16SData: Efficient Access to the Human Microbiome Project through BioconductorDOI 10.1101/299115Read

Accessible, curated metagenomic data through ExperimentHubSemantic proximity Read

Strains, functions and dynamics in the expanded Human Microbiome ProjectSemantic proximity Read

Strengthening The Organization and Reporting of Microbiome Studies (STORMS): A Reporting Checklist for Human Microbiome ResearchSemantic proximity Read

The “Most Wanted” Taxa from the Human Microbiome for Whole Genome SequencingSemantic proximity Read

Integration of 168,000 samples reveals global patterns of the human gut microbiomeSemantic proximity Read

Analyses of the Stability and Core Taxonomic Memberships of the Human MicrobiomeSemantic proximity Read

Public human microbiome data dominated by highly developed countriesSemantic proximity Read

The Human Microbiome Project strategy for comprehensive sampling of the human microbiome and why it mattersSemantic proximity Read

A Core Human Microbiome as Viewed through 16S rRNA Sequence ClustersSemantic proximity Read

The South American MicroBiome Archive (saMBA): Enriching the healthy microbiome concept by evaluating uniqueness and biodiversity of neglected populationsSemantic proximity Read

Structure, function and diversity of the healthy human microbiome.Semantic proximity Read

GutMeta: online microbiome analysis and interactive visualization with build-in curated human gut microbiome databaseSemantic proximity Read