Article

Miniature: Unsupervised glimpses into multiplexed tissue imaging datasets as thumbnails for data portals

2024-10-02

Abstract excerpt

Multiplexed tissue imaging can illuminate complex spatial protein expression patterns in healthy and diseased specimens. Large-scale atlas programs such as Human Tumor Atlas Network and are relying heavily on highly-multiplexed approaches including CyCIF and CODEX to image up to 100 antigens. Such high dimensionality allows a deep understanding of cellular diversity and spatial structure, but can provide a challen...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: a4a97753-32b3-54e6-b786-7a372fe4c115
DOI: 10.1101/2024.10.01.615855

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Miniature: Unsupervised glimpses into multiplexed tissue imaging datasets as thumbnails for data portalsDOI 10.1101/2024.10.01.615855Read

Mistic: an open-source multiplexed image t-SNE viewerSemantic proximity Read

CellMAPS: A no-code model-based customisable multiplex image analysis workflowSemantic proximity Read

An integrative web-based software tool for multi-dimensional pathology whole-slide image analyticsSemantic proximity Read

UMITIC: An unsupervised framework for the joint characterization of cellular phenotypes and spatial neighborhoods in multiplex and hyperplex immunofluorescence imaging dataSemantic proximity Read

Multi-modal image analysis for large scale cancer tissue studies within IMMUcanSemantic proximity Read

Unsupervised discovery of tissue architecture in multiplexed imagingSemantic proximity Read

An Unsupervised Graph Embeddings Approach to Multiplex Immunofluorescence Image ExplorationSemantic proximity Read

HYDRA: Revealing heterogeneity of imaging and genetic patterns through a multiple max-margin discriminative analysis frameworkSemantic proximity Read

Multi-Scale Tri-Modal Histology Dataset Integrating Tumor Morphology, Immune Patterns, and Clinical OutcomesSemantic proximity Read

Image model embeddings for digital pathology and drug development via self-supervised learningSemantic proximity Read

A Multi-Granularity Approach to Similarity Search in Multiplexed Immunofluorescence ImagesSemantic proximity Read

Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clusteringSemantic proximity Read