Article

Comparative analysis of amplicon and metagenomic sequencing methods reveals key features in the evolution of animal metaorganisms

2019-04-10

Abstract excerpt

<h4>Background</h4> The interplay between hosts and their associated microbiome is now recognized as a fundamental basis of the ecology, evolution and development of both players. These interdependencies inspired a new view of multicellular organisms as “metaorganisms”. The goal of the Collaborative Research Center “Origin and Function of Metaorganisms” is to understand why and how microbial communities form long...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 9dd3cab4-4458-5e76-ba99-c44af61bb508
DOI: 10.1101/604314

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Comparative analysis of amplicon and metagenomic sequencing methods reveals key features in the evolution of animal metaorganismsDOI 10.1101/604314Read

The functional microbiome of arthropodsSemantic proximity Read

Large scale metagenome assembly reveals novel animal-associated microbial genomes, biosynthetic gene clusters, and other genetic diversitySemantic proximity Read

Analysis of the microbiome: Advantages of whole genome shotgun versus 16S amplicon sequencingSemantic proximity Read

The AnimalAssociatedMetagenomeDB reveals a bias towards livestock and developed countries and blind spots in functional-potential studies of animal-associated microbiomesSemantic proximity Read

A molecular inventory of the faecal microbiomes of 23 marsupial speciesSemantic proximity Read

GAIA: an integrated metagenomics suiteSemantic proximity Read

A global survey of host, aquatic, and soil microbiomes reveals shared abundance and genomic features between bacterial and fungal generalistsSemantic proximity Read

ASaiM-MT: a validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy frameworkSemantic proximity Read

Quantitative microbiome profiling in lumenal and tissue samples with broad coverage and dynamic range via a single-step 16S rRNA gene DNA copy quantification and amplicon barcodingSemantic proximity Read

Cross-study metagenomics analysis reveals distinct microbial signatures of urinary tract infectionsSemantic proximity Read

Reference genome-independent taxonomic profiling of microbiomes with mOTUs3Semantic proximity Read

A universal set of primers to study animal associated microeukaryotic communitiesSemantic proximity Read