Article

SPEX: A modular end-to-end platform for high-plex tissue spatial omics analysis

2022-08-23

Abstract excerpt

<h4>ABSTRACT</h4> Recent advancements in transcriptomics and proteomics have opened the possibility for spatially resolved molecular characterization of tissue architecture with the promise of enabling a deeper understanding of tissue biology in either homeostasis or disease. The wealth of data generated by these technologies has recently driven the development of a wide range of computational methods. These meth...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 9aadc823-1637-5e61-aa58-c1c642875bd1
DOI: 10.1101/2022.08.22.504841

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

SPEX: A modular end-to-end platform for high-plex tissue spatial omics analysisDOI 10.1101/2022.08.22.504841Read

Toward Computationally Complete Spatial OmicsSemantic proximity Read

Spatial omics for profiling the dynamic tumor microenvironmentSemantic proximity Read

Giotto Suite: a multi-scale and technology-agnostic spatial multi-omics analysis ecosystemSemantic proximity Read

CosMxScope: Scalable Reconstruction and Digital Pathology Integration of Imaging-Based Spatial Transcriptomics DataSemantic proximity Read

PRISM: A Python Package for Interactive and Integrated Analysis of Multiplexed Tissue MicroarraysSemantic proximity Read

<i>mosna</i> reveals different types of cellular interactions predictive of response to immunotherapies and survival in cancerSemantic proximity Read

scBSP: A fast and accurate tool for identifying spatially variable features from high-resolution spatial omics dataSemantic proximity Read

FUSION: A web-based application for in-depth exploration of multi-omics data with brightfield histologySemantic proximity Read

spatialGE: A user-friendly web application to democratize spatial transcriptomics analysisSemantic proximity Read

spacedeconv: deconvolution of tissue architecture from spatial transcriptomicsSemantic proximity Read

Enabling Panoramic Integration of Spatial Multi-omics and Histology with GSMOSemantic proximity Read

MONTAGE: A Computation Framework to Identify Spatially Resolved Functional Enrichment Gradients in the Tissue Microenvironment via Spatial CommunitiesSemantic proximity Read