CellSP: Module discovery and visualization for subcellular spatial transcriptomics data

Abstract excerpt

<h4>ABSTRACT</h4> Spatial transcriptomics has enabled the study of mRNA distributions within cells, a key aspect of cellular function. However, there is a dearth of tools that can identify and interpret functionally relevant spatial patterns of subcellular transcript distribution. To address this, we present CellSP, a computational framework for identifying, visualizing, and characterizing consistent subcellular...

Topics

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• Cytomegalovirus and herpesvirus research
• Gene Expression Profiling
• Immune cells in cancer
• Phenotype
• Single-cell and spatial transcriptomics
• Technology
• Transcriptome

Identifiers and source

Literature Corpus work

92d91af5-b9e8-5dba-8109-d4b1deb88284

DOI

10.1101/2025.01.12.632553