Article

kakapo: Easy extraction and annotation of genes from raw RNA-seq reads

2023-02-15

Abstract excerpt

kakapo (kākāpō) is a python-based pipeline that allows users to extract and assemble one or more specified genes or gene families. It flexibly uses original RNA-seq read or GenBank SRA accession inputs without performing assembly of entire transcriptomes. The pipeline identifies open reading frames in the assembled gene transcripts and annotates them. It optionally filters raw reads for ribosomal, plastid, and mit...

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Literature Corpus work: 9210a2e1-d7b8-57d0-bcc3-23f4e53e4d45
DOI: 10.1101/2023.02.13.528395

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