Article

Strain intrinsic properties and environmental constraints together shape Escherichia coli dynamics and diversity over a twenty-year human gut time series

2024-02-21

Abstract excerpt

Escherichia coli is an increasingly antibiotic-resistant opportunistic pathogen. Few data are available on its ecological and evolutionary dynamics in its primary commensal niche, the vertebrate gut. Using Illumina and/or Nanopore technologies, we sequenced whole genomes of 210 E. coli isolates from 22 stools sampled during a 20-year period from a healthy man (ED) living in Paris, France. All phylogroups, except C...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 91223e9f-d206-54a7-9d30-c648830458d2
DOI: 10.1101/2024.02.21.581337

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Strain intrinsic properties and environmental constraints together shape Escherichia coli dynamics and diversity over a twenty-year human gut time seriesDOI 10.1101/2024.02.21.581337Read

The population genomics of increased virulence and antibiotic resistance in human commensal Escherichia coli over 30 years in FranceSemantic proximity Read

Population Phylogenomics of Extraintestinal Pathogenic Escherichia coli.Semantic proximity Read

The bacterial genetic determinants of Escherichia coli capacity to cause bloodstream infections in humansSemantic proximity Read

Phylogenetic, virulence and antibiotic resistance characteristics of commensal strain populations of Escherichia coli from community subjects in the Paris area in 2010 and evolution over 30 years.Semantic proximity Read

Pangenomes of Human Gut Microbiota Uncover Links Between Genetic Diversity and Stress ResponseSemantic proximity Read

Evolution of a Dominant Natural Isolate of Escherichia coli in the Human Gut over the Course of a Year Suggests a Neutral Evolution with Reduced Effective Population Size.Semantic proximity Read

A widespread gut bacterial lineage distinguished by redox metabolism and phage defenseSemantic proximity Read

Pangenomes of human gut microbiota uncover links between genetic diversity and stress response.Semantic proximity Read

Comparative genomics of DH5α-inhibiting Escherichia coli isolates from human feces reveals common co-occurrence of bacteriocin genes with virulence factors and antibiotic resistance genesSemantic proximity Read

Global diversity of enterococci and description of 18 novel speciesSemantic proximity Read

Hidden Diversity in Enterococcus faecalis Revealed by CRISPR2 Screening: Eco-evolutionary Insights into a Novel SubspeciesSemantic proximity Read

Apparent nosocomial adaptation of Enterococcus faecalis predates the modern hospital eraSemantic proximity Read