Article

KBase Research Agent: Automated Multi-Agent Workflow Construction for Reproducible Genome Analysis <sup>*</sup>

2026-06-04

Abstract excerpt

Constructing multi-step bioinformatics workflows, from read quality control through genome assembly to functional annotation, requires expertise in both biology and computational tool selection, creating a bottleneck for scalable and reproducible analysis. We present the KBase Research Agent, a multi-agent system for automating such workflows within the DOE Systems Biology Knowledgebase (KBase). Given a set of seq...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 89a8fc18-0b75-5668-b7af-5acc9ea73df6
DOI: 10.64898/2026.06.01.729336

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

KBase Research Agent: Automated Multi-Agent Workflow Construction for Reproducible Genome Analysis <sup>*</sup>DOI 10.64898/2026.06.01.729336Read

BioAgent: An Auditable Multi-Agent Framework for Reproducible Translational BioinformaticsSemantic proximity Read

PromptBio: A Multi-Agent AI Platform for Bioinformatics Data AnalysisSemantic proximity Read

Pipette: Encoding scientific literature into an executable Skill Graph for multi-agent bioinformaticsSemantic proximity Read

Comparative benchmarking of AI research agents for omics data interpretationSemantic proximity Read

Agentic systems are adept at solving well-scoped, verifiable problems in computational biologySemantic proximity Read

CellAgent: LLM-Driven Multi-Agent Framework for Natural Language-Based Single-Cell AnalysisSemantic proximity Read

EcoXAI: Autonomous Agentic Ecosystem for Explainable Artificial Intelligence and Biomedical DiscoverySemantic proximity Read

Agentomics: An Agentic System that Autonomously Develops Novel State-of-the-art Solutions for Biomedical Machine Learning TasksSemantic proximity Read

GeneBench: Assessing AI Agents for Multi-Stage Inference Problems in Genomics and Quantitative BiologySemantic proximity Read

Eubiota: Modular Agentic AI for Autonomous Discovery in the Gut MicrobiomeSemantic proximity Read

OmniCellAgent: An AI Scientist for Omic-Driven Scientific DiscoverySemantic proximity Read

KG-Orchestra: An Open-Source Multi-Agent Framework for Evidence-Based Biomedical Knowledge Graphs EnrichmentSemantic proximity Read