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Clinical metagenomics bioinformatics pipeline for the identification of hospital-acquired pneumonia pathogens antibiotic resistance genes from bronchoalveolar lavage samples

2020-02-27

Abstract excerpt

<h4>Background</h4> Shortening the time-to-result for pathogen detection and identification and antibiotic susceptibility testing for patients with Hospital-Acquired and Ventilator-Associated pneumonia (HAP-VAP) is of great interest. For this purpose, clinical metagenomics is a promising non-hypothesis driven alternative to traditional culture-based solutions: when mature, it would allow direct sequencing all mic...

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Literature Corpus work
818c5b4a-f0a9-5b8f-9ff3-c2bf8212e725
DOI
10.1101/2020.02.26.966309
Open publication

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Clinical metagenomics bioinformatics pipeline for the identification of hospital-acquired pneumonia pathogens antibiotic resistance genes from bronchoalveolar lavage samplesDOI 10.1101/2020.02.26.966309
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