Article

Recommendations for the FAIRification of genomic track metadata

2021-04-01

Abstract excerpt

<h4>Background: </h4> Many types of data from genomic analyses can be represented as genomic tracks, i.e. features linked to the genomic coordinates of a reference genome. Examples of such data are epigenetic DNA methylation data, ChIP-seq peaks, germline or somatic DNA variants, as well as RNA-seq expression levels. Researchers often face difficulties in locating, accessing and combining relevant tracks from ext...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 763d09a8-2623-5cbe-9e12-32ea6a33fbd9
DOI: 10.12688/f1000research.28449.1

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Recommendations for the FAIRification of genomic track metadataDOI 10.12688/f1000research.28449.1Read

Implementing a data infrastructure for precision oncology projects leveraging REDCapSemantic proximity Read

The Federated European Genome-phenome Archive as a global network for sharing human genomics dataSemantic proximity Read

Trecode: a FAIR eco-system for the analysis and archiving of omics data in a combined diagnostic and research settingSemantic proximity Read

Data navigation on the ENCODE PortalSemantic proximity Read

snpQT: flexible, reproducible, and comprehensive quality control and imputation of genomic dataSemantic proximity Read

Beacon v2 and Beacon networks: A "lingua franca" for federated data discovery in biomedical genomics, and beyond.Semantic proximity Read

Recommendations for the formatting of Variant Call Format (VCF) files to make plant genotyping data FAIR.Semantic proximity Read

FAIR Header Reference genome: A TRUSTworthy standardSemantic proximity Read

MatchMiner: An open source computational platform for real-time matching of cancer patients to precision medicine clinical trials using genomic and clinical criteriaSemantic proximity Read

“GPress: a framework for querying General Feature Format (GFF) files and feature expression files in a compressed form”Semantic proximity Read

TidyGEO: Preparing analysis-ready datasets from Gene Expression OmnibusSemantic proximity Read

High-performance web services for querying gene and variant annotation.Semantic proximity Read