Article

WEVOTE: Weighted Voting Taxonomic Identification Method of Microbial Sequences

2016-05-19

Abstract excerpt

Metagenome shotgun sequencing presents opportunities to identify organisms that may prevent or promote disease. The analysis of sample diversity is achieved by taxonomic identification of metagenomic reads followed by generating an abundance profile. Numerous tools have been developed based on different design principles. Tools achieving high precision can lack sensitivity in some applications. Conversely, tools w...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 5344fe64-1f82-59ae-89ee-9efefa33cf8f
DOI: 10.1101/054205

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

WEVOTE: Weighted Voting Taxonomic Identification Method of Microbial SequencesDOI 10.1101/054205Read

Comprehensive Benchmarking and Ensemble Approaches for Metagenomic ClassifiersSemantic proximity Read

One Codex: A Sensitive and Accurate Data Platform for Genomic Microbial IdentificationSemantic proximity Read

MT-MAG: Accurate and interpretable machine learning for complete or partial taxonomic assignments of metagenome-assembled genomesSemantic proximity Read

NANOTAXI: A Shiny-Based GUI for Real-Time Classification and Analysis of 16S rRNA Nanopore ReadsSemantic proximity Read

Autometa: Automated extraction of microbial genomes from individual shotgun metagenomesSemantic proximity Read

RIEMS: a software pipeline for sensitive and comprehensive taxonomic classification of reads from metagenomics datasetsSemantic proximity Read

WITOD: A Tool for Within-Taxon Operational Taxonomic Unit Diversity AnalysisSemantic proximity Read

Ultrafast and accurate 16S microbial community analysis using Kraken 2Semantic proximity Read

Seqwin: Ultrafast identification of signature sequences in microbial genomesSemantic proximity Read

Wochenende - modular and flexible alignment-based shotgun metagenome analysisSemantic proximity Read

Eliminate false positives in metagenomic profiling based on type IIB restriction sitesSemantic proximity Read

Taxonomic profilers and their influence on metagenomic diversity analysesSemantic proximity Read