Back to search

Article

GNOSIS: an R Shiny app supporting cancer genomics survival analysis with cBioPortal

2022-09-12

Abstract excerpt

Exploratory analysis of cancer consortia data curated by the cBioPortal repository typically requires advanced programming skills and expertise to identify novel genomic prognostic markers that have the potential for both diagnostic and therapeutic exploitation. We developed GNOSIS (GeNomics explOrer using StatistIcal and Survival analysis in R), an R Shiny App incorporating a range of R packages enabling users to...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work
4619f972-52f9-58a6-bb8e-6408f8789802
DOI
10.12688/hrbopenres.13476.2
Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest
Interactive article relationship graphSelect a related publication card to move it into the centre and load its closest explainable connections. Solid lines are source-backed structured connections. Dashed lines are semantic discovery signals and are not scientific evidence.
GNOSIS: an R Shiny app supporting cancer genomics survival analysis with cBioPortalDOI 10.12688/hrbopenres.13476.2
surviveR: a flexible shiny application for patient survival analysisSemantic proximity
CancerStop.dev: An Interactive Web Platform Integrating Prognostic Data, Clinical Trials, and Genomic Resources for Patient EmpowermentSemantic proximity
Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal.Semantic proximity
Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortalSemantic proximity
The Personalized Cancer Network Explorer (PeCaX) as a visual analytics tool to support molecular tumor boardsSemantic proximity
PathScore: a web tool for identifying altered pathways in cancer dataSemantic proximity
Coral: a web-based visual analysis tool for creating and characterizing cohortsSemantic proximity
The UCSC Cancer Genomics Browser: update 2015.Semantic proximity
PanCanSurvPlot: A Large-scale Pan-cancer Survival Analysis Web ApplicationSemantic proximity
TCGAnalyzeR: a web application for integrative visualization of molecular and clinical data of cancer patients for cohort and associated gene discoverySemantic proximity
A user guide for the online exploration and visualization of PCAWG data.Semantic proximity
EGIDExpress: An Interactive Shiny Web App to Visualize and Share Large Biological DatasetsSemantic proximity
Select a neighboring publication to make it the new centre.