Article

SAP: Synteny-aware gene function prediction for bacteria using protein embeddings

2023-05-02

Abstract excerpt

<h4>Motivation</h4> Today, we know the function of only a small fraction of the protein sequences predicted from genomic data. This problem is even more salient for bacteria, which represent some of the most phylogenetically and metabolically diverse taxa on Earth. This low rate of bacterial gene annotation is compounded by the fact that most function prediction algorithms have focused on eukaryotes, and conventi...

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Literature Corpus work: 42d3ee89-e79a-5795-a5d1-9093068036cd
DOI: 10.1101/2023.05.02.539034

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