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Article

Spatial Meta-transcriptomes of human and murine intestines

2021-12-13

Abstract excerpt

We developed an analysis pipeline that can extract microbial sequences from Spatial Transcriptomic data and assign taxonomic labels to them, generating a spatial microbial abundance matrix in addition to the default host expression one, enabling simultaneous analysis of host expression and microbial distribution. We applied it on both human and murine intestinal datasets and validated the spatial microbial abundan...

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Identifiers and source

Literature Corpus work
37be59c4-2e62-5ff8-96c6-3997ed00f149
DOI
10.1101/2021.12.13.472336
Open publication

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Spatial Meta-transcriptomes of human and murine intestinesDOI 10.1101/2021.12.13.472336
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