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STID: A Standardized Spatial Transcriptomic Analysis Framework for Infectious Diseases

2026-05-27

Abstract excerpt

<h4>Summary</h4> Spatial transcriptomic studies of infectious diseases still rely on fragmented data analysis processes. Here, we developed STID, a standardized framework for spatial transcriptomic analysis of infectious diseases that leverages the Seurat ecosystem and incorporates Python-based modules. STID provides an extensible infection-specific data structure and supports a full suite of analyses, such as pa...

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Literature Corpus work
0df32691-6909-5b84-a55f-592a8ba64e38
DOI
10.64898/2026.05.24.727492
Open publication

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