Article

Robust Segmentation of Cellular Ultrastructure on Sparsely Labeled 3D Electron Microscopy Images using Deep Learning

2021-05-28

Abstract excerpt

<h4>Summary</h4> A deeper understanding of the cellular and subcellular organization of tumor cells and their interactions with the tumor microenvironment will shed light on how cancer evolves and guide effective therapy choices. Electron microscopy (EM) images can provide detailed view of the cellular ultrastructure and are being generated at an ever-increasing rate. However, the bottleneck in their analysis is...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 2c0399df-eace-5da5-92eb-39a87d4a9c5a
DOI: 10.1101/2021.05.27.446019

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Robust Segmentation of Cellular Ultrastructure on Sparsely Labeled 3D Electron Microscopy Images using Deep LearningDOI 10.1101/2021.05.27.446019Read

TomoScore: A Neural Network Approach for Quality Assessment of Cellular cryoETSemantic proximity Read

CryoViT: Efficient Segmentation of Cryogenic Electron Tomograms with Vision Foundation ModelsSemantic proximity Read

Unsupervised Multi-scale Segmentation of Cellular cryo-electron Tomograms with Stable Diffusion Foundation ModelSemantic proximity Read

Deciphering Tumour Tissue Organization by 3D Electron Microscopy and machine learningSemantic proximity Read

UNSEG: unsupervised segmentation of cells and their nuclei in complex tissue samplesSemantic proximity Read

Sparse Annotation is Sufficient for Bootstrapping Dense Neuron SegmentationSemantic proximity Read

CebraEM: A practical workflow to segment cellular organelles in volume SEM datasets using a transferable CNN-based membrane predictionSemantic proximity Read

Bin2cell reconstructs cells from high resolution Visium HD dataSemantic proximity Read

Whole-cell segmentation of tissue images with human-level performance using large-scale data annotation and deep learningSemantic proximity Read

The Allen Cell and Structure Segmenter: a new open source toolkit for segmenting 3D intracellular structures in fluorescence microscopy imagesSemantic proximity Read

CellBinDB: A Large-Scale Multimodal Annotated Dataset for Cell Segmentation with Benchmarking of Universal ModelsSemantic proximity Read

OrganoLabeling: Quick and accurate annotation tool for organoid imagesSemantic proximity Read