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The user’s guide to comparative genomics with EnteroBase, including case studies on transmissions of micro-clades of <i>Salmonella</i> , the phylogeny of ancient and modern <i>Yersinia pestis</i> genomes, and the core genomic diversity of all <i>Escherichia</i>

2019-04-18

Abstract excerpt

EnteroBase is an integrated software environment which supports the identification of global population structures within several bacterial genera that include pathogens. Here we provide an overview on how EnteroBase works, what it can do, and its future prospects. EnteroBase has currently assembled more than 300,000 genomes from Illumina short reads from Salmonella, Escherichia, Yersinia, Clostridiodes, Helicoba...

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Literature Corpus work
1c37ddf3-ac5f-55cd-ac18-25a29f4b8e6b
DOI
10.1101/613554
Open publication

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The user’s guide to comparative genomics with EnteroBase, including case studies on transmissions of micro-clades of <i>Salmonella</i> , the phylogeny of ancient and modern <i>Yersinia pestis</i> genomes, and the core genomic diversity of all <i>Escherichia</i>DOI 10.1101/613554
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